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transform_to_assembly is removing connections between symmetric ligands

Status: Open.

#432 In project-gemmi/gemmi;

· roshkjr opened on May 28, 2026

Feature request: <I/sigma>, <I>, <sigma> from gemmi.Intensities.calculate_merging_stats()

Status: Open.

#431 In project-gemmi/gemmi;

· MartinMalyMM opened on May 27, 2026

Could CI have caught the #413-422 initializer-removal regression? An analysis

Status: Open.

#429 In project-gemmi/gemmi;

· CV-GPhL opened on May 22, 2026

Handling unmerged data in _refln. blocks in SF mmCIF

Status: Open.

#424 In project-gemmi/gemmi;

· paulsbond opened on May 15, 2026

Pairs being lost

Status: Open.

#423 In project-gemmi/gemmi;

· tdudgeon opened on Apr 30, 2026

update_mmcif_block does not preserve all mmCIF categories

Status: Open.

#411 In project-gemmi/gemmi;

· glevans opened on Mar 30, 2026

make_assembly behaviour change from 0.6.5 to 0.7.5

Status: Open.

#410 In project-gemmi/gemmi;

· jackdent opened on Mar 23, 2026

existing proton hunt tries to find H name that doesn't exist

Status: Open.

#404 In project-gemmi/gemmi;

· rimmartin opened on Feb 20, 2026

transform_to_assembly and connectivity for pdb vs cif

Status: Open.

#388 In project-gemmi/gemmi;

· rimmartin opened on Aug 11, 2025

The Python test 'test_syntax_error' fails with syntax error

Status: Open.

#384 In project-gemmi/gemmi;

· yurivict opened on Jul 22, 2025

How to patch the organic fragment across unit cell boundaries? Thanks!

Status: Open.

#377 In project-gemmi/gemmi;

· zhangfq-chemistry opened on Jul 1, 2025

Generate symmetry environment

Status: Open.

#365 In project-gemmi/gemmi;

· isohelio opened on May 12, 2025