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@biodiversitydata-se Swedish Biodiversity Data Infrastructure

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    74 repositories

    • sbdi-eDNA-biosyst-eu

      Public
      Material for “Exploring eDNA in SBDI” workshop adapted for BioSyst EU 2026, Uppsala
      R
      •0•0•0•0•Updated Aug 14, 2026Aug 14, 2026

    • analytics-data-collector

      Public
      Collects and aggregates data from various sources into an analytics database
      Python
      •0•0•0•0•Updated Aug 14, 2026Aug 14, 2026

    • biologging-sensor-client

      Public
      SBDI Biologging webclient portal, using the biologging-API
      TypeScript
      •
      GNU General Public License v3.0
      •0•2•9•0•Updated Aug 12, 2026Aug 12, 2026

    • sbdi-days-eDNA

      Public
      Material for “Exploring eDNA in SBDI” workshop (SBDI Days 2026)
      R
      •
      Other
      •0•0•0•0•Updated Aug 12, 2026Aug 12, 2026

    • asvoccur

      Public
      Tools for ASV occurrence data in SBDI
      R
      •
      Other
      •0•1•0•0•Updated Aug 12, 2026Aug 12, 2026

    • ala-bie-hub

      Public
      BIE (Biodiversity Information Explorer) hub - merge of old ala-bie and bie-plugin
      Groovy
      •
      Mozilla Public License 2.0
      •8•0•1•0•Updated Aug 11, 2026Aug 11, 2026

    • web

      Public
      The biodiversitydata.se website
      HTML
      •0•1•0•0•Updated Aug 10, 2026Aug 10, 2026

    • SOS

      Public
      Species Observation System (SOS)
      C#
      •
      European Union Public License 1.2
      •3•20•3•1•Updated Jul 29, 2026Jul 29, 2026

    • specieslist-webapp

      Public
      Species lists and traits tool
      Groovy
      •
      Mozilla Public License 2.0
      •22•0•2•1•Updated Jul 17, 2026Jul 17, 2026

    • base-branding

      Public
      Base LA header, banner, footer branding and index for new Living Atlas deployments
      CSS
      •
      Other
      •10•1•0•1•Updated Jul 10, 2026Jul 10, 2026

    • biocollect

      Public
      Biocollect front end application for Bioatlas
      Groovy
      •
      Other
      •14•0•29•0•Updated Jun 12, 2026Jun 12, 2026

    • hp-sbdi

      Public archive
      SBDI Hosted Portal
      HTML
      •0•0•0•0•Updated Jun 9, 2026Jun 9, 2026

    • userdetails

      Public
      Atlas user management - includes "my profile", user data and admin functions
      Groovy
      •
      Other
      •18•0•1•0•Updated Jun 2, 2026Jun 2, 2026

    • repo-overview

      Public
      Overview of SBDI-related repos
      0•0•0•0•Updated May 28, 2026May 28, 2026

    • sbdi-gtdb-nf-phylomarkercheck

      Public
      Makefile
      •
      MIT License
      •0•1•0•0•Updated May 20, 2026May 20, 2026

    • hespi

      Public
      HErbarium Specimen sheet PIpeline
      Python
      •
      Apache License 2.0
      •5•0•0•0•Updated May 11, 2026May 11, 2026

    • proxy-ws-mol-mod-docker

      Public
      HTML
      •0•0•0•0•Updated May 5, 2026May 5, 2026

    • nginx-geoip2

      Public
      Docker image with nginx and geoip2 module
      Dockerfile
      •0•0•0•0•Updated May 4, 2026May 4, 2026

    • api-docs

      Public
      SBDI API Documentation
      HTML
      •1•0•0•0•Updated May 4, 2026May 4, 2026

    • mol-mod

      Public
      Module for sequence-based occurrence data in Biodiversity Atlas Sweden.
      Python
      •
      Creative Commons Zero v1.0 Universal
      •1•3•0•0•Updated Apr 29, 2026Apr 29, 2026

    • biologging-sensor-datamodel

      Public
      Datamodel documentation of the SBDI Biologging portal
      0•1•0•0•Updated Apr 28, 2026Apr 28, 2026

    • ala-cas-5

      Public
      ALA CAS 5 implementation
      Kotlin
      •
      Apache License 2.0
      •11•0•5•0•Updated Apr 27, 2026Apr 27, 2026

    • sbdi-phylomarkercheck

      Public
      Nextflow
      •
      MIT License
      •1•1•0•0•Updated Apr 21, 2026Apr 21, 2026

    • biocache-solr

      Public
      Dockerized solr instance used by biocache-service
      Dockerfile
      •0•0•0•0•Updated Apr 9, 2026Apr 9, 2026

    • spatial-service

      Public
      Spatial web services and layer administration console
      Groovy
      •12•0•1•1•Updated Apr 9, 2026Apr 9, 2026

    • geoserver

      Public
      Dockerized GeoServer instance used by spatial-service and spatial-hub
      Shell
      •0•0•0•0•Updated Apr 9, 2026Apr 9, 2026

    • spatial-hub

      Public
      New spatial portal front end using AngularJS
      JavaScript
      •18•0•1•0•Updated Apr 9, 2026Apr 9, 2026

    • logger-service

      Public
      Atlas event logging
      Groovy
      •9•0•1•0•Updated Apr 9, 2026Apr 9, 2026

    • image-service

      Public
      Image repository and tiling services
      Groovy
      •17•0•1•1•Updated Apr 9, 2026Apr 9, 2026

    • data-quality-filter-service

      Public
      Groovy
      •4•0•0•1•Updated Apr 9, 2026Apr 9, 2026
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