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    43 repositories

    • service-icav2-wes-manager

      Public
      Run analyses through ICAv2-backed WES interface
      Python
      •
      MIT License
      •0•0•8•1•Updated Aug 5, 2026Aug 5, 2026

    • service-case-manager

      Public
      Python
      •
      MIT License
      •0•0•5•1•Updated Aug 5, 2026Aug 5, 2026

    • service-fastq-manager

      Public
      Fastq management service
      Python
      •
      MIT License
      •0•0•4•0•Updated Aug 5, 2026Aug 5, 2026

    • service-oncoanalyser-wgts-dna-pipeline-manager

      Public
      Run oncoanalyser through the OrcaBus orchestration system
      Python
      •
      MIT License
      •0•1•0•0•Updated Aug 5, 2026Aug 5, 2026

    • orca-ui-v2

      Public
      Temporary Repo for Orcabus LIMS Web UI v2
      TypeScript
      •
      MIT License
      •0•0•1•1•Updated Aug 5, 2026Aug 5, 2026

    • service-dragen-tso500-ctdna-pipeline-manager

      Public
      Run the dragen TSO500 ctDNA v2.X NF pipeline through ICAv2
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 5, 2026Aug 5, 2026

    • service-dragen-wgts-rna-pipeline-manager

      Public
      Dragen RNA Pipeline Orchestration through ICAv2
      Python
      •
      MIT License
      •0•0•5•1•Updated Aug 4, 2026Aug 4, 2026

    • service-oncoanalyser-wgts-rna-pipeline-manager

      Public
      Oncoanalyser WGTS RNA Pipeline Orchestration Service
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Aug 4, 2026Aug 4, 2026

    • service-arriba-wgts-rna-pipeline-manager

      Public
      Arriba WGTS RNA Pipeline Orchestration Service
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 4, 2026Aug 4, 2026

    • service-pieriandx-tso500-ctdna-pipeline-manager

      Public
      PierianDx Microservice - create / monitor TSO500 ctDNA PierianDx jobs
      Python
      •
      MIT License
      •0•0•11•1•Updated Aug 4, 2026Aug 4, 2026

    • service-dragen-wgts-dna-pipeline-manager

      Public
      The dragen wgts dna pipeline manager
      Python
      •
      MIT License
      •1•0•2•1•Updated Aug 4, 2026Aug 4, 2026

    • service-fastq-sync-manager

      Public
      Holds Step functions tasks until fastq requirements are met
      TypeScript
      •
      MIT License
      •0•0•6•1•Updated Aug 4, 2026Aug 4, 2026

    • service-sash-pipeline-manager

      Public
      Run Sash through Nextflow on ICAv2
      Python
      •
      MIT License
      •0•0•2•1•Updated Aug 3, 2026Aug 3, 2026

    • service-rnasum-pipeline-manager

      Public
      Run RNASum via the OrcaBus
      TypeScript
      •
      MIT License
      •0•0•1•1•Updated Aug 3, 2026Aug 3, 2026

    • service-oncoanalyser-wgts-both-pipeline-manager

      Public
      Run the oncoanalyser-wgts-both pipeline from Oncoanalyser DNA + RNA inputs
      Python
      •
      MIT License
      •0•0•5•1•Updated Aug 3, 2026Aug 3, 2026

    • service-bclconvert-interop-qc-pipeline-manager

      Public
      BCLConvert InterOp QC Pipeline Manager
      TypeScript
      •
      MIT License
      •0•0•2•1•Updated Aug 3, 2026Aug 3, 2026

    • orca-ui

      Public
      TypeScript
      •
      MIT License
      •0•1•22•0•Updated Jul 30, 2026Jul 30, 2026

    • service-system-catalog

      Public
      Document, explore, and plan system architecture through interactive diagrams with searchable service and event metadata.
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Jul 15, 2026Jul 15, 2026

    • service-sash-regression

      Public
      Compare sash
      Python
      •
      MIT License
      •0•0•2•0•Updated Jul 14, 2026Jul 14, 2026

    • service-icav2-data-copy-manager

      Public
      Service for copying data from one ICAv2 destination to another
      Python
      •
      MIT License
      •0•0•2•1•Updated Jul 9, 2026Jul 9, 2026

    • service-sequence-run-manager

      Public
      Sequence Run Manager Stack
      Python
      •
      MIT License
      •0•0•4•1•Updated Jul 7, 2026Jul 7, 2026

    • service-filemanager

      Public
      The filemanager tracks object state in S3
      Rust
      •
      MIT License
      •0•2•23•1•Updated Jul 7, 2026Jul 7, 2026

    • service-shared-resources

      Public
      TypeScript
      •
      MIT License
      •0•0•3•1•Updated Jul 6, 2026Jul 6, 2026

    • service-data-sharing-manager

      Public
      Data Sharing Orchestration Service
      Python
      •
      MIT License
      •0•0•12•1•Updated Jul 2, 2026Jul 2, 2026

    • service-workflow-manager

      Public
      Workflow Manager Stack
      Python
      •
      MIT License
      •0•0•12•2•Updated Jul 2, 2026Jul 2, 2026

    • service-fastq-decompression-manager

      Public
      Decompress Fastq Files from ORA to GZIP with serverless compute
      TypeScript
      •
      MIT License
      •0•0•4•0•Updated Jun 30, 2026Jun 30, 2026

    • platform-cdk-constructs

      Public
      Python
      •
      MIT License
      •0•0•5•2•Updated Jun 25, 2026Jun 25, 2026

    • service-analysis-glue

      Public
      The 'glue-code' for generating analyses post primary-data creation
      Python
      •
      MIT License
      •0•0•3•0•Updated Jun 25, 2026Jun 25, 2026

    • service-deploy-status-manager

      Public
      Provides realtime information for each microservice's CloudFormation deployment in dev/stg/prod envs
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Jun 22, 2026Jun 22, 2026

    • service-metadata-manager

      Public
      Python
      •
      MIT License
      •0•0•2•0•Updated Jun 16, 2026Jun 16, 2026
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