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    23 repositories

    • proteomescout-v4

      Public
      Flat text file based proteomescout
      Python
      •
      Other
      •0•0•0•0•Updated Jul 29, 2026Jul 29, 2026

    • SISA-KiT

      Public
      Information, pipelines, and protocols for making phosphoproteins with SISA-KiT
      Other
      •0•0•0•0•Updated Jul 9, 2026Jul 9, 2026

    • KSTAR

      Public
      Kinase-Substrate Translation to Activity Relationships
      Python
      •
      Other
      •1•8•14•0•Updated Jul 9, 2026Jul 9, 2026

    • ProteomeScoutAPI

      Public
      Python
      •
      Other
      •0•0•2•0•Updated Jul 5, 2026Jul 5, 2026

    • CoDIAC

      Public
      Python
      •
      Other
      •2•2•3•0•Updated Jul 3, 2026Jul 3, 2026

    • SH2_contact_analysis

      Public
      CoDIAC-based analysis of the human SH2 domain family
      Gherkin
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jul 3, 2026Jul 3, 2026

    • DANSy

      Public
      Analysis of protein domain architectures by combining the linguistic approach n-gram analysis with network theory.
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jun 4, 2026Jun 4, 2026

    • DANSy_Applications

      Public
      Example applications of the DANSy linguistic network analysis
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 3, 2026Jun 3, 2026

    • ExonPTMapper

      Public
      Python package for processing exon information from Ensembl/Biomart, mapping this information to PTM information from ProteomeScout, and doing downstream analys…
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 22, 2026May 22, 2026

    • PTM-POSE

      Public
      Python package for projecting PTMs onto any splice event quantification data, such as those from MATS or SpliceSeq
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 19, 2026May 19, 2026

    • SF_KD_Phosphoproteomics_Analysis

      Public
      All code associated with data analysis and figure generation for manuscript on phosphoproteomic analysis of U2AF1 and SRSF3 knockdown
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Apr 20, 2026Apr 20, 2026

    • KSTAR_Applications

      Public
      Code demonstrating KSTAR examples and as published
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •1•1•0•0•Updated Apr 10, 2026Apr 10, 2026

    • proteome-scout-3

      Public
      Python
      •0•0•10•0•Updated Jul 7, 2025Jul 7, 2025

    • BivalentModeling_tanSH2

      Public
      Adaptation of Errington et al. Matlab code to predict tandem SH2 domain interactions
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 13, 2025May 13, 2025

    • ASPEN

      Public
      ASPEN repository, associated with 2019 publication
      Python
      •
      GNU General Public License v3.0
      •3•3•0•0•Updated Apr 25, 2025Apr 25, 2025

    • OpenEnsembles

      Public
      Code for ensemble clustering
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •16•103•1•0•Updated Apr 24, 2025Apr 24, 2025

    • PTM_Splicing_Analysis

      Public
      Contains all code used to generate data and figures for the following manuscript:
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • TNBC_KSTAR_Analysis

      Public
      Code used for the analysis of active kinases across triple negative breast cancer patients
      Jupyter Notebook
      •
      Other
      •0•2•0•0•Updated Oct 15, 2024Oct 15, 2024

    • KinPred

      Public
      KinPred code for unification of kinase-prediction resources
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 10, 2022May 10, 2022

    • KinaseToolkitModeling

      Public
      MATLAB
      •0•0•0•0•Updated Apr 28, 2021Apr 28, 2021

    • ProteomeScout

      Public
      PHP
      •0•0•3•0•Updated Dec 3, 2019Dec 3, 2019

    • Competition_modeling

      Public
      Notes and code from my rotation with the Naegle lab (modeling competition between phosphotyrosine binding partners)
      Jupyter Notebook
      •0•0•0•0•Updated Jun 6, 2018Jun 6, 2018

    • ASPEN_dev

      Public
      Python
      •0•0•0•0•Updated Jul 31, 2017Jul 31, 2017
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