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Pull requests: gc-os-ai/pyaptamer

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Pull requests list

[ENH] Add transform pipeline for primer removal from SELEX data
#752 opened Aug 5, 2026 by aditi-dsi Member • Draft
2 of 3 tasks
1
[MNT] [Dependabot](deps-dev): Update ruff requirement from >=0.16.0 to >=0.16.1 maintenance
#751 opened Aug 3, 2026 by dependabot Bot Loading…
[MNT] [Dependabot](deps): Update datasets requirement from >=5.0.0 to >=5.0.1 maintenance
#749 opened Jul 28, 2026 by dependabot Bot Loading…
[BUG] Track fitted state & expose __sklearn_tags__ on BaseTransform
#746 opened Jul 23, 2026 by siddharth7113 Collaborator Loading…
1
@siddharth7113
4
[MNT] [Dependabot](deps): Bump actions/setup-python from 6 to 7 maintenance
#742 opened Jul 20, 2026 by dependabot Bot Loading…
[ENH] Port RaptGen core components to layers
#741 opened Jul 17, 2026 by NoorMajdoub Loading…
1 task
1
@NoorMajdoub
24
[ENH] AptaDiff: Noise and denoise schedules, loss functions, transformer layers
#739 opened Jul 16, 2026 by aditi-dsi Member Loading…
3 tasks done
1
@aditi-dsi
[ENH] Refactor AptaTrans onto the scikit-learn fit/predict contract
#734 opened Jul 13, 2026 by siddharth7113 Collaborator • Draft
[ENH] Adds sequence encoder for AptaDiff diffusion preprocessing
#732 opened Jul 13, 2026 by aditi-dsi Member Loading…
3 tasks done
1
@aditi-dsi
15
test: cover previously-uncovered branches in utils modules (issue #725)
#731 opened Jul 12, 2026 by gandzekas Loading…
3 tasks done
[MNT] add coverage for utils._aa_str_to_letter, _pseaac_utils, _aptatrans_utils
#730 opened Jul 12, 2026 by siddhanttiwari19 Loading…
3 tasks done
1
12
[ENH] Add Torch deepDNAshape predictor for DeepAptamer
#729 opened Jul 12, 2026 by Alleny244 Contributor Loading…
3 tasks done
1
35
[MNT] [Dependabot](deps): Bump actions/checkout from 4 to 7 maintenance
#695 opened Jun 18, 2026 by dependabot Bot Loading…
MNT: Expose PositionalEncoding and TokenPredictor in aptatrans layers
#694 opened Jun 18, 2026 by pranavchoudhary-tech Loading…
1
1
[MNT] [Dependabot](deps-dev): Update myst-parser requirement from >=2.0 to >=4.0.1 maintenance
#691 opened Jun 12, 2026 by dependabot Bot Loading…
[MNT] [Dependabot](deps-dev): Update sphinx-copybutton requirement from >=0.5 to >=0.5.2 maintenance
#690 opened Jun 12, 2026 by dependabot Bot Loading…
[MNT] [Dependabot](deps): Bump actions/upload-artifact from 4 to 7 maintenance
#689 opened Jun 12, 2026 by dependabot Bot Loading…
chore: update issue and PR templates with checklist rules
#681 opened Jun 7, 2026 by rayrishu19-wq Loading…
3 tasks done
[MNT] Move import warnings to module level and add AMINO_ACIDS to __all__ in _pseaac_utils.py
#674 opened May 23, 2026 by Ramrajnagar Loading…
1
4
[BUG] Replace assert with ValueError in PositionalEncoding.forward()
#668 opened May 16, 2026 by tarun-227 Loading…
2 tasks
1
2
[FEAT] (aptable): add AptaBLE module with symmetric bidirectional cross-attention interaction map
#661 opened May 9, 2026 by DZDasherKTB Loading…
2
[BUG] Use ValueError instead of AssertionError for input validation in AptaTrans
#659 opened May 8, 2026 by onkar717 Contributor Loading…
1
[MNT] Rename 'type' parameter to 'output_type' in aa_props()
#657 opened May 8, 2026 by onkar717 Contributor Loading…
1
[BUG] Add encoder_type validation in AptaTransEncoderLightning
#653 opened May 8, 2026 by onkar717 Contributor Loading…
1
[BUG] Remove global np.random.seed() from AptaNetClassifier/Regressor.fit()
#651 opened May 7, 2026 by onkar717 Contributor Loading…
1
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