Antibody dynamics using PyMC.
Github repo.
Make a new virtual environment and pip install abdpymc.
The main entry points are abdpymc-infer to run inference on data and abdpymc-plot-timelines to
plot individual timelines.
To see this repo in action, see our paper:
Pattinson, D. J. et al. Emergence of SARS-CoV-2 Omicron lineages shifted antibody-mediated protection curves. iScience 113386 (2025) doi:10.1016/j.isci.2025.113386.
All the data and code from that paper are in this repository.