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User Guide

Welcome to the PANgenome Analyzer with CHromosomal Exploration (PANACHE) wiki

How to use Panache

The list of features is documented here

How to format your data

Panache uses a TSV file that extends BED format to allow the insertion of new information such as a presence absence matrix and functional categories. In practice, this is a 8 tabular column that stores start and stop positions of the chromosome blocks with presence/absence matrix (1/0) computed block similarity (optional), functional category (optional).

Actual files can be find in the public folder, and detailed information are available in the Files and Formats section of the wiki

Questions or need help?

The documentation is being improved regularly. Detailed information are to be added as specific sections, make sure to check them. If you have any question not covered by the current documentation, we will be more than happy to answer it directly.

Please open an issue or send a message to eloi.durant(at)ird.fr