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Fixes to mkdb tests after merging it in Python package #240: Commit 7ab6d24 pushed by nromashchenko
4m 52s merge
merge
4m 52s
added tests for mkdb Python package #239: Commit f359796 pushed by nromashchenko
2m 37s develop
develop
2m 37s
updated the bbinom optimizer to retry multiple times if the first fit… Python package #238: Commit 49224bc pushed by nromashchenko
4m 58s bbinom
bbinom
4m 58s
Removed df_cap. Restructured namedtuple containers to isolate data Python package #237: Commit f183e2d pushed by nromashchenko
4m 25s merge
merge
4m 25s
refactoring search Python package #236: Commit bfbf78b pushed by nromashchenko
3m 3s merge
merge
3m 3s
reimplemented bbinom fits: bounded-memory histograms, fit diagnostics, Python package #235: Commit 79f2fc0 pushed by nromashchenko
4m 38s bbinom
bbinom
4m 38s
reimplemented bbinom fits: bounded-memory histograms, fit diagnostics, Python package #234: Commit 79f2fc0 pushed by nromashchenko
5m 51s bbinom-mi
bbinom-mi
5m 51s
added --kmer_percentage to mkdb -- to learn beta-binomial coeffs from Python package #233: Commit 8327702 pushed by nromashchenko
2m 1s bbinom-mi
bbinom-mi
2m 1s
Merge remote-tracking branch 'origin/bbinom' into bbinom-mi Python package #232: Commit 113585c pushed by nromashchenko
4m 17s bbinom-mi
bbinom-mi
4m 17s
Performance improvement for .tsv output Python package #231: Commit 3cd48aa pushed by nromashchenko
4m 23s bbinom
bbinom
4m 23s
Merge commit '99678e' into bbinom-mi Python package #230: Commit e5e8f48 pushed by nromashchenko
4m 12s bbinom-mi
bbinom-mi
4m 12s
Improvements for numba caching Python package #229: Commit 99678e7 pushed by nromashchenko
4m 23s bbinom
bbinom
4m 23s
Added the same filter for sequence Python package #228: Commit 41e3ebd pushed by nromashchenko
4m 45s bbinom-mi
bbinom-mi
4m 45s
test implementation of the updated k-mer filter based on PMI for 3di Python package #227: Commit 97e2494 pushed by nromashchenko
4m 19s bbinom-mi
bbinom-mi
4m 19s
small optimization for the expected count in the binomial model Python package #226: Commit 7f0649b pushed by nromashchenko
4m 19s bbinom
bbinom
4m 19s
Added --df_cap to skip k-mers hitting more than certain number of Python package #225: Commit d26740e pushed by nromashchenko
4m 5s bbinom
bbinom
4m 5s
performance updates to the beta binomial ccdf and a bbinom filter Python package #224: Commit 0055bdc pushed by nromashchenko
4m 1s bbinom
bbinom
4m 1s
small fix of bbinom compute Python package #223: Commit 222d95a pushed by nromashchenko
4m 6s bbinom
bbinom
4m 6s
Test implementation for the beta-binomial fit. Workaround commands added Python package #222: Commit 7733c0d pushed by nromashchenko
4m 7s bbinom
bbinom
4m 7s
Reordered families to stop early evalue computation Python package #221: Commit 1efe624 pushed by nromashchenko
51s curnagl
curnagl
51s
Reimplemented 3di load in mkdb Python package #220: Commit 9756d47 pushed by nromashchenko
2m 1s structure
structure
2m 1s
Extended OMAmerDBLike protocol for typing Python package #219: Commit 4157d29 pushed by nromashchenko
1m 58s structure
structure
1m 58s
Made original DBs (without structure) backward compatible with this Python package #218: Commit 4c06637 pushed by nromashchenko
2m 6s structure
structure
2m 6s
github_actions in /. - Update #1248225069 Dependabot Updates #216: by dependabot Bot
23s master
master
23s
github_actions in /. - Update #1246630060 Dependabot Updates #215: by dependabot Bot
25s master
master
25s