Allen Institute for Neural Dynamics
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- dynamic-foraging-processing Public
A library for processing dynamic foraging behavior data acquired on the new acquisition standard
- aind-file-standards Public
This repository contains the file standards for the Allen Institute for Neural Dynamics
- LCNE-patchseq-figures Public
Reproducible Code Ocean capsule for generating supplementary figure S14j/k from LCNE patch-seq recordings on DANDI.
- aind-torch-utils Public
Generic, queue-based, multi-GPU PyTorch inference pipeline for large volumetric (3D or 5D T,C,Z,Y,X) data.
- aind-exaspim-image-compression Public
A Python package for compressing ExaSPIM image datasets via denoising and lossy compression.
- aind-beh-ephys-analysis Public
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