DESCRIPTION

Package: copykat
Type: Package
Title: CopyKAT: Inference of genomic copy number and subclonal structure of human tumors from high-throughput single cell RNA-seq data
Version: 1.2.5
Date: 2026-06-12
Author: Ruli Gao
Maintainer: Ruli Gao <ruli.gao@northwestern.edu>
Description: CopyKAT is a computational tool for calculating single cell DNA copy numbers to separate aneuploid cells from diploid cells, and tumor subclones using high-throughput sc-RNAseq data.
License: GPL-2
Encoding: UTF-8
LazyData: true
Imports:
  parallel,
	parallelDist,
	dlm,
	gplots,
	RColorBrewer,
	mixtools,
	cluster,
	MCMCpack,
  transport,
  stats,
  utils
RoxygenNote: 7.3.2
Suggests: 
    knitr,
    rmarkdown
VignetteBuilder: knitr