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documentation.md
norm_scripts/resolve_multimappers.pl
norm_scripts/filter_and_label.pl
norm_scripts/filter_and_label_gnorm.pl
norm_scripts/filter_and_resolve.pl
norm_scripts/filter_and_resolve_gnorm.pl
norm_scripts/cat_genes_files_resolve.pl
norm_scripts/resolve_multimappers_gnorm.pl
norm_scripts/runall_filter_and_resolve.pl
norm_scripts/runall_sam2genes_gnorm_resolve.pl
norm_scripts/cat_genes_files_0.pl
norm_scripts/filter_sam_gnorm_0.pl
norm_scripts/run_normalization_0
norm_scripts/runall_filter_gnorm_0.pl
norm_scripts/runall_normalization_0.pl
norm_scripts/runall_sam2genes_gnorm_0.pl
norm_scripts/quantify_exons_introns.pl.0
norm_scripts/cat_gnorm_Unique_NU_0.pl
norm_scripts/cat_shuffiles_0.pl
norm_scripts/unique_merge_gnorm_0.pl
norm_scripts/unique_merge_samfiles_0.pl
norm_scripts/filter_high_expressers_gnorm.0.pl
norm_scripts/testfiletype.pl
norm_scripts/check_samformat_test.pl
norm_scripts/add_highexp_counts_eij.pl
norm_scripts/get_master_list_of_exons.0.pl
norm_scripts/get_master_list_of_genes.0.pl
norm_scripts/make_final_spreadsheets.0.pl
norm_scripts/quants2spreadsheet.1.0.pl
norm_scripts/quants2spreadsheet_min_max.0.pl
norm_scripts/runall_cat_gnorm_Unique_NU.0.pl
norm_scripts/runall_filter_high_expressers_gnorm.0.pl
norm_scripts/runall_normalization.0.pl
norm_scripts/cat_gnorm_Unique_NU.1.pl
norm_scripts/filter_high_expressers_gnorm.1.pl
norm_scripts/quantify_exons_introns.1.pl
norm_scripts/run_normalization_1
norm_scripts/solve_system_equations.pl
norm_scripts/solve_system_equations.0.pl
norm_scripts/runall_shuf_gnorm_highexp.0.pl
norm_scripts/sam2mappingstats.0.pl
norm_scripts/runall_shuf_highexp.new.pl
norm_scripts/runall_normalization.add_samples.pl
norm_scripts/get_total_num_reads.add_samples.pl
norm_scripts/make_list_of_high_expressers.0.pl
norm_scripts/get_genepercents.use_ambcol.pl
norm_scripts/get_genepercents.tmp.pl
norm_scripts/get_exon_intron_percents.new.pl
norm_scripts/test_cigar2spans.pl
norm_scripts/filter_sam.chrM.pl
norm_scripts/filter_sam_gnorm.chrM.pl
norm_scripts/pm/src
norm_scripts/testopenssh.pl