Hi team,
I generated an svdquartets nexus file from DNA SNP data in R and opened in splitstree 6 to make a neighbourhood network. I have the most recent version of SplitsTree6 v7.9 downloaded. When I open the file none of the DNA base pairs are recognised and all converted to gaps '-'. Ambiguity codes and missing data '?' are kept. I downloaded an earlier version v5.1 and the same nexus file was read and analysed no problem, so I assume its a big rather than something wrong with my file.
Thanks,
Nina
SplitsTree6.7.9 not reading DNA codes:
Nexus file (works in version 5.1):
Hi team,
I generated an svdquartets nexus file from DNA SNP data in R and opened in splitstree 6 to make a neighbourhood network. I have the most recent version of SplitsTree6 v7.9 downloaded. When I open the file none of the DNA base pairs are recognised and all converted to gaps '-'. Ambiguity codes and missing data '?' are kept. I downloaded an earlier version v5.1 and the same nexus file was read and analysed no problem, so I assume its a big rather than something wrong with my file.
Thanks,
Nina
SplitsTree6.7.9 not reading DNA codes:
Nexus file (works in version 5.1):